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BatchKi
Reference Manual
Petr Kuzmič, Ph.D.
BioKin Ltd.
- Contents
- Introduction
- Installation
- Program Execution
- Control Settings and Templates
- [Confidence Intervals]
- [Enzyme concentration]
- [Output]
- Parameter AllProgressCurves
- Parameter GraphicFormat
- Parameter GraphicProgress
- Parameter GraphsPerRow
- Parameter GridRectangleSize
- Parameter InhibitorNameLength
- Parameter LeverageHigh
- Parameter LeverageLow
- Parameter LogPotency
- Parameter OnlySummarySpreadsheet
- Parameter OnlyVelocities
- Parameter ReportIC50
- [Progress]
- [Velocities]
- Parameter AdjustVoInitialEstimate
- Parameter Model
- Parameter ExcludeLargeSquares
- Parameter MultipleOfMedianSquare
- Parameter ExcludeNegativeRates
- Parameter AverageReplicates
- Parameter ConstantWeights
- Parameter RelativeWeights
- Parameter RequireNegativeControl
- Parameters related to optimized baseline rate
- Parameter AutoBaseline
- Parameter AutoBaselineCutoff
- Parameter NegativeBaselineLimit
- Parameter OptimizePositiveBackground
- Parameter BackgroundTolerance
- Parameters related to robust regression analysis
- Template Files
- Input Data
- Single or Multiple Data Sets
- Plate Size and Unique ID
- Additional Information (Optional)
- Plate Layout
- Concentrations
- Plate Reader Output
- Output Files
- Run Summary Files
- HTML Output File
- ASCII Delimited (Excel) File
- platid - Plate ID
- enz - Enzyme ID
- econc - Enzyme concentration (M)
- sub - Substrate ID
- sconc - Substrate concentration (M)
- inh - Inhibitor ID
- kiapp - Apparent inhibition constant (M)
- sterr - Formal standard error of apparent inhibition constant (M)
- cvar - Coefficient of variation (%)
- cnflos - Linear approximation of the lower limit for the confidence interval
- cnfhis - Linear approximation of the upper limit for the confidence interval
- cnflo - Lower limit of the confidence interval
- cnfhi - Upper limit of the confidence interval
- prblo - Probability level reached at the lower limit
- prbhi - Probability level reached at the upper limit
- prlev - Desired probability level
- nfree - Degrees of freedom
- sdfit - Standard deviation of fit
- persd - Percentage of sdfit relative to control velocity
- eo - Fitted enzyme concentration
- eoer - Standard error of enzyme concentration
- vo - Fitted control velocity
- voer - Standard error of control velocity
- vb - Baseline velocity
- vber - Standard error of baseline velocity
- r2adj - Adjusted regression coefficient
- Plate Summary Files
- Inhibitor Output Files
- Run Summary Files
- DTD for BatchKi Input File
- Chebyshev Orthogonal Polynomials
- List of Figures
- List of Tables
- Bibliography
- Index
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Petr Kuzmic | Jul 12 2008