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Bibliography
Research papers in which DynaFit was used for the analysis of experimental data.

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This figure shows the cumulative number of articles citing the original DYNAFIT paper [P. Kuzmic (1996) Anal. Biochem. 237, 260-273].

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DYNAFIT citation count

Chronological List of ArticlesTop of pageNext section

The following articles contain a bibliographic reference to the program DYNAFIT as of January 24, 2006.

  1. "libSRES: a C library for stochastic ranking evolution strategy for parameter estimation"
    Ji, XL; Xu, Y (2006)
    Bioinformatics 22(1), 124-126.
  2. "ATPase mechanism of Eg5 in the absence of microtubules: Insight into microtubule activation and allosteric inhibition by monastrol"
    Cochran, JC; Gilbert, SP (2005)
    Biochemistry 44(50), 16633-16648.
  3. "Uracil-directed ligand tethering: An efficient strategy for uracil DNA glycosylase (UNG) inhibitor development"
    Jiang, YL; Krosky, DJ; Seiple, L; Stivers, JT (2005)
    J. Am. Chem. Soc. 127(49), 17412-17420.
  4. "Inhibition of class D beta-lactamases by diaroyl phosphates"
    Majumdar, S; Adediran, SA; Nukaga, M; Pratt, RF (2005)
    Biochemistry 44(49), 16121-16129.
  5. "Transient state kinetic studies of the MutT-catalyzed nucleoside triphosphate pyrophosphohydrolase reaction"
    Xia, ZY; Azurmendi, HF; Mildvan, AS (2005)
    Biochemistry 44(46), 15334-15344.
  6. "Biosynthesis of isoprenoids. Purification and properties of IspG protein from Escherichia coli"
    Zepeck, F; Grawert, T; Kaiser, J; Schramek, N; Eisenreich, W; Bacher, A; Rohdich, F (2005)
    J. Org. Chem. 70(23), 9168-9174.
  7. "Membrane composition determines the fate of aggregated vesicles"
    Webb, SJ; Trembleau, L; Mart, RJ; Wang, X (2005)
    Org. Biomol. Chem. 3(20), 3615-3617.
  8. "Dehydration of D-fructose to hydroxymethylfurfural in sub- and supercritical fluids"
    Bicker, M; Kaiser, D; Ott, L; Vogel, H (2005)
    J. Supercrit. Fluids 36(2), 118-126.
  9. "Synthesis and properties of azobenzocrown ethers with pi-electron donor,or pi-electron donor and pi-electron acceptor group(s) on benzene ring(s)"
    Luboch, E; Wagner-Wysiecka, E; Poleska-Muchlado, Z; Kravtsov, VC (2005)
    Tetrahedron 61(45), 10738-10747.
  10. "Assembly of an RNA-protein complex - Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli"
    Greive, SJ; Lins, AF; von Hippel, PH (2005)
    J. Biol. Chem. 280(43), 36397-36408.
  11. "Cyclam based Hg(II)- and Cu(II)-selective fluoroionophore having appended pyrene function"
    Youn, NJ; Kim, JS; Song, KC; Kim, SH; Ahn, SD; Chang, SK (2005)
    Bull. Korean Chem. Soc. 26(5), 849-851.
  12. "Inhibition of class D beta-lactamases by acyl phosphates and phosphonates"
    Adediran, SA; Nukaga, M; Baurin, S; Frere, JM; Pratt, RF (2005)
    Antimicrob. Agents Chemother. 49(10), 4410-4412.
  13. "Design, synthesis, and biochemical evaluation of 1,5,6,7-tetrahydro-6,7-dioxo-9-D-ribitylaminolumazines bearing alkyl phosphate substituents as inhibitors of lumazine synthase and riboflavin synthase"
    Cushman, M; Jin, GY; Illarionov, B; Fischer, M; Ladenstein, R; Bacher, A (2005)
    J. Org. Chem. 70(20), 8162-8170.
  14. "Engineering functional changes in Escherichia coli endonuclease III based on phylogenetic and structural analyses"
    Watanabe, T; Blaisdel, JO; Wallace, SS; Bond, JP (2005)
    J. Biol. Chem. 280(40), 34378-34384.
  15. "Deprotonation of the horse liver alcohol dehydrogenase-NAD(+) complex controls formation of the ternary complexes"
    Kovaleva, EG; Plapp, BV (2005)
    Biochemistry 44(38), 12797-12808.
  16. "Leukotriene A(4) hydrolase, insights into the molecular evolution by homology modeling and mutational analysis of enzyme from Saccharomyces cerevisiae"
    Tholander, F; Kull, F; Ohlson, E; Shafqat, J; Thunnissen, MMGM; Haeggstrom, JZ (2005)
    J. Biol. Chem. 280(39), 33477-33486.
  17. "Isotope effects on the enzymatic and nonenzymatic reactions of chorismate"
    Wright, SK; DeClue, MS; Mandal, A; Lee, L; Wiest, O; Cleland, WW; Hilvert, D (2005)
    J. Am. Chem. Soc. 127(37), 12957-12964.
  18. "The catalytic and conformational cycle of Aquifex aeolicus KD08P synthase: Role of the L7 loop"
    Xu, XJ; Kona, F; Wang, J; Lu, JH; Stemmler, T; Gatti, DL (2005)
    Biochemistry 44(37), 12434-12444.
  19. "Recognition of saccharides by the OpcA, OpaD, and OpaB outer membrane proteins from Neisseria meningitidis"
    Moore, J; Bailey, SES; Benmechernene, Z; Tzitzilonis, C; Griffiths, NJE; Virji, M; Derrick, JP (2005)
    J. Biol. Chem. 280(36), 31489-31497.
  20. "Is Arg418 the catalytic base required for the hydrolysis step of the IMP dehydrogenase reaction?"
    Schlippe, YVG; Hedstrom, L (2005)
    Biochemistry 44(35), 11700-11707.
  21. "Allosteric inhibition of aminoglycoside phosphotransferase by a designed ankyrin repeat protein"
    Kohl, A; Amstutz, P; Parizek, P; Binz, HK; Briand, C; Capitani, G; Forrer, P; Pluckthun, A; Grutter, MG (2005)
    Structure 13(8), 1131-1141.
  22. "Kinetics and mechanistic aspects of the Heck reaction promoted by a CN-palladacycle"
    Consorti, CS; Flores, FR; Dupont, J (2005)
    J. Am. Chem. Soc. 127(34), 12054-12065.
  23. "Kinetic analysis of steps in the repair of damaged DNA by human O-6-alkylguanine-DNA alkyltransferase"
    Zang, Z; Fang, QM; Pegg, AE; Guengerich, FP (2005)
    J. Biol. Chem. 280(35), 30873-30881.
  24. "Membrane fusion induced by neuronal SNAREs transits through hemifusion"
    Lu, XB; Zhang, F; McNew, JA; Shin, YK (2005)
    J. Biol. Chem. 280(34), 30538-30541.
  25. "Fluorescence analysis of a dynamic loop in the PCAF/GCN5 histone acetyltransferase"
    Zheng, YJ; Mamdani, F; Toptygin, D; Brand, L; Stivers, JT; Cole, PA (2005)
    Biochemistry 44(31), 10501-10509.
  26. "SpeB-Spi: a novel protease-inhibitor pair from Streptococcus pyogenes"
    Kagawa, TF; O'Toole, PW; Cooney, JC (2005)
    Mol. Microbiol. 57(3), 650-666.
  27. "Transpeptidation reactions of a specific substrate catalyzed by the Streptomyces R61 DD-peptidase: The structural basis of acyl acceptor specificity"
    Kumar, I; Pratt, RF (2005)
    Biochemistry 44(30), 9961-9970.
  28. "Transpeptidation reactions of a specific substrate catalyzed by the Streptomyces R61 DD-peptidase: Characterization of a chromogenic substrate and acyl acceptor design"
    Kumar, I; Pratt, RF (2005)
    Biochemistry 44(30), 9971-9979.
  29. "Kinetics of substrate recognition and cleavage by human 8-oxoguanine-DNA glycosylase"
    Kuznetsov, NA; Koval, VV; Zharkov, DO; Nevinsky, GA; Douglas, KT; Fedorova, OS (2005)
    Nucleic Acids Res. 33(12), 3919-3931.
  30. "Interaction between the bacterial nucleoid associated proteins Hha and H-NS involves a conformational change of Hha"
    Garcia, J; Cordeiro, TN; Nieto, JM; Pons, I; Juarez, A; Pons, M (2005)
    Biochem. J. 388(Pt. Part 3), 755-762.
  31. "Na+ site in blood coagulation factor IXa: Effect on catalysis and factor VIIIa binding"
    Schmidt, AE; Stewart, JE; Mathur, A; Krishnaswamy, S; Bajaj, SP (2005)
    J. Mol. Biol. 350(1), 78-91.
  32. "Is the critical role of loop 3 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase in catalysis due to loop-3 residues arginine-84 and tryptophan-89? Site-directed mutagenesis, biochemical, and crystallographic studies"
    Li, Y; Blaszczyk, J; Wu, Y; Shi, GB; Ji, XH; Yan, HG (2005)
    Biochemistry 44(24), 8590-8599.
  33. "Rapid electron transfer between monomers when the cytochrome bc(1) complex dimer is reduced through center N"
    Covian, R; Trumpower, BL (2005)
    J. Biol. Chem. 280(24), 22732-22740.
  34. "An interaction between S center dot tag and S center dot protein derived from human ribonuclease 1 allows site-specific conjugation of an enzyme to an antibody for targeted drug delivery"
    Asai, T; Wims, LA; Morrison, SL (2005)
    J. Immunol. Methods 299(1-2), 63-76.
  35. "Evolution of vitamin B-2 biosynthesis: riboflavin synthase of Arabidopsis thaliana and its inhibition by riboflavin"
    Fischer, M; Haase, I; Feicht, R; Schramek, N; Kohler, P; Schieberle, P; Bacher, A (2005)
    Biol. Chem. 386(5), 417-428.
  36. "Stochastic boundary molecular dynamics simulation of L-ribose in the active site of Actinoplanes missouriensis xylose isomerase and its Val135Asn mutant with improved reaction rate"
    Santa, H; Kammonen, J; Lehtonen, O; Karimaki, J; Pastinen, O; Leisola, M; Turunen, O (2005)
    BBA-Proteins Proteomics 1749(1), 65-73.
  37. "Enzyme family-specific and activity-based screening of chemical libraries using enzyme microarrays"
    Funeriu, DP; Eppinger, J; Denizot, L; Miyake, M; Miyake, J (2005)
    Nat. Biotechnol. 23(5), 622-627.
  38. "Formation and reorientation of glucose 1,6-bisphosphate in the PMM/PGM reaction: Transient-state kinetic studies"
    Naught, LE; Tipton, PA (2005)
    Biochemistry 44(18), 6831-6836.
  39. "The affinity of protein C for the thrombin center dot thrombomodulin complex is determined in a primary way by active site-dependent interactions"
    Lu, GM; Chhum, S; Krishnaswamy, S (2005)
    J. Biol. Chem. 280(15), 15471-15478.
  40. "Antisense oligonucleotides inhibiting ribosomal functions in mycobacteria"
    Demchenko, YN; Zenkova, MA; Vlassov, VV (2005)
    Biol. Bull 32(2), 101-107.
  41. "Genetically selected cyclic-peptide inhibitors of AICAR transformylase homodimerization"
    Tavassoli, A; Benkovic, SJ (2005)
    Angew. Chem.-Int. Edit. 44(18), 2760-2763.
  42. "Sequence-specific binding of m-phenylene ethynylene foldamers to a piperazinium dihydrochloride salt"
    Goto, K; Moore, JS (2005)
    Org. Lett. 7(9), 1683-1686.
  43. "Human RNA polymerase II elongation in slow motion: Role of the TFIIF RAP74 alpha 1 helix in nucleoside triphosphate-driven translocation"
    Zhang, CF; Zobeck, KL; Burton, ZF (2005)
    Mol. Cell. Biol. 25(9), 3583-3595.
  44. "Solvent role on cobalt(II) dioxygen carriers based on simple polyamine ligands"
    Del Piero, S; Ghezzi, L; Melchior, A; Tine, MR; Tolazzi, M (2005)
    Helv. Chim. Acta 88(4), 839-853.
  45. "The functional basis of mycophenolic acid resistance in Candida albicans IMP dehydrogenase"
    Kohler, GA; Gong, X; Bentink, S; Theiss, S; Pagani, GM; Agabian, N; Hedstrom, L (2005)
    J. Biol. Chem. 280(12), 11295-11302.
  46. "Evidence for the presence of Mn(III) intermediates in the bacterial oxidation of Mn(II)"
    Webb, SM; Dick, GJ; Bargar, JR; Tebo, BM (2005)
    Proc. Natl. Acad. Sci. U. S. A. 102(15), 5558-5563.
  47. "Product release is rate-limiting in the activation of the prodrug 5-fluorocytosine by yeast cytosine deaminase"
    Yao, LS; Li, Y; Wu, Y; Liu, AZ; Yan, HG (2005)
    Biochemistry 44(15), 5940-5947.
  48. "The role of Val-265 for flavin adenine dinucleotide (FAD) binding in pyruvate oxidase: FTIR, kinetic, and crystallographic studies on the enzyme variant V265A"
    Wille, G; Ritter, M; Weiss, MS; Konig, S; Mantele, W; Hubner, G (2005)
    Biochemistry 44(13), 5086-5094.
  49. "FEDMA - a simple algorithm for theoretical modeling of linear metabolic pathways: from fuzzy data sets to prediction and experiment"
    Pawlowski, PH; Zielenkiewicz, P (2005)
    Acta Biochim. Pol. 52(1), 71-86.
  50. "Evolutionary optimization with data collocation for reverse engineering of biological networks"
    Tsai, KY; Wang, FS (2005)
    Bioinformatics 21(7), 1180-1188.
  51. "Structural characterization of copper(II) binding to alpha-synuclein: Insights into the bioinorganic chemistry of Parkinson's disease"
    Rasia, RM; Bertoncini, CW; Marsh, D; Hoyer, W; Cherny, D; Zweckstetter, M; Griesinger, C; Jovin, TM; Fernandez, CO (2005)
    Proc. Natl. Acad. Sci. U. S. A. 102(12), 4294-4299.
  52. "3,4-disubstituted azetidinones as selective inhibitors of the cysteine protease cathepsin K. Exploring P3 elements for potency and selectivity"
    Setti, EL; Davis, D; Janc, JW; Jeffery, DA; Cheung, H; Yu, W (2005)
    Bioorg. Med. Chem. Lett. 15(5), 1529-1534.
  53. "Cloning and expression of ostrich trypsinogen: an avian trypsin with a highly sensitive autolysis site"
    Szenthe, B; Frost, C; Szilagyi, L; Patthy, A; Naude, R; Graf, L (2005)
    BBA-Proteins Proteomics 1748(1), 35-42.
  54. "Analysis of ATP binding to CheA containing tryptophan substitutions near the active site"
    Stewart, RC (2005)
    Biochemistry 44(11), 4375-4385.
  55. "Dipole-dipole interactions in spin-labeled Au nanoparticles as a measure of interspin distances"
    Ionita, P; Caragheorgheopol, A; Gilbert, BC; Chechik, V (2005)
    J. Phys. Chem. B 109(9), 3734-3742.
  56. "Diametrically disubstituted cyclam derivative having Hg2+-selective fluoroionophoric behaviors"
    Moon, SY; Youn, NJ; Park, SM; Chang, SK (2005)
    J. Org. Chem. 70(6), 2394-2397.
  57. "Pre-steady-state kinetic analysis of riboflavin synthase using a pentacyclic reaction intermediate as substrate"
    Illarionov, B; Haase, I; Fischer, M; Bacher, A; Schramek, N (2005)
    Biol. Chem. 386(2), 127-136.
  58. "Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase"
    Valley, MP; Tichy, SE; Fitzpatrick, PF (2005)
    J. Am. Chem. Soc. 127(7), 2062-2066.
  59. "Effects of ionic strength on the functional interactions between CYP2134 and CYP1A2"
    Kelley, RW; Reed, JR; Backes, WL (2005)
    Biochemistry 44(7), 2632-2641.
  60. "On the competition for available zinc"
    Heinz, U; Kiefer, M; Tholey, A; Adolph, HW (2005)
    J. Biol. Chem. 280(5), 3197-3207.
  61. "Kinetic analysis of the calmodulin-binding region of the plasma membrane calcium pump isoform 4b"
    Penheiter, AR; Filoteo, AG; Penniston, JT; Caride, AJ (2005)
    Biochemistry 44(6), 2009-2020.
  62. "Analysis of slow-binding enzyme inhibitors at elevated enzyme concentrations"
    Perdicakis, B; Montgomery, HJ; Guillemette, JG; Jervis, E (2005)
    Anal. Biochem. 337(2), 211-223.
  63. "Probing a rate-limiting step by mutational perturbation of AdoMet binding in the Hhal methyltransferase"
    Merkiene, E; Klimasauskas, S (2005)
    Nucleic Acids Res. 33(1), 307-315.
  64. "Properties and reactivity of chlorovinylcobalamin and vinylcobalamin and their implications for vitamin B-12-catalyzed reductive dechlorination of chlorinated alkenes"
    McCauley, KM; Pratt, DA; Wilson, SR; Shey, J; Burkey, TJ; van der Donk, WA (2005)
    J. Am. Chem. Soc. 127(4), 1126-1136.
  65. "Kinetic and thermodynamic studies of tet repressor-tetracycline interaction"
    Kedracka-Krok, S; Gorecki, A; Bonarek, P; Wasylewski, Z (2005)
    Biochemistry 44(3), 1037-1046.
  66. "Dimethylcyclam based fluoroionophore having Hg2+- and Cd2+-selective signaling behaviors"
    Youn, NJ; Chang, SK (2005)
    Tetrahedron Lett. 46(1), 125-129.
  67. "Mechanistic study of a place-exchange reaction of au nanoparticles with spin-labeled disulfides"
    Ionita, P; Caragheorgheopol, A; Gilbert, BC; Chechik, V (2004)
    Langmuir 20(26), 11536-11544.
  68. "Reaction specificity in pyridoxal phosphate enzymes"
    Toney, MD (2005)
    Arch. Biochem. Biophys. 433(1), 279-287.
  69. "alpha-Glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens"
    van Bueren, AL; Finn, R; Ausio, J; Boraston, AB (2004)
    Biochemistry 43(49), 15633-15642.
  70. "Borohydride reactivity of cellulose reducing ends"
    Kongruang, S; Penner, MH (2004)
    Carbohydr. Polym. 58(2), 131-138.
  71. "Ribonuclease activity of vaccinia DNA topoisomerase IB: Kinetic and high-throughput inhibition studies using a robust continuous fluorescence assay"
    Kwon, K; Nagarajan, R; Stivers, JT (2004)
    Biochemistry 43(47), 14994-15004.
  72. "Alleviation of restriction by DNA condensation and non-specific DNA binding ligands"
    Keatch, SA; Su, TJ; Dryden, DTF (2004)
    Nucleic Acids Res. 32(19), 5841-5850.
  73. "Residues within the B ' motif are critical for DNA binding by the superfamily 3 helicase Rep40 of adeno-associated virus type 2"
    Yoon-Robarts, M; Blouin, AG; Bleker, S; Kleinschmidt, JA; Aggarawal, AK; Escalante, CR; Linden, RM (2004)
    J. Biol. Chem. 279(48), 50472-50481.
  74. "Inhibition of wild-type and mutant human immunodeficiency virus type 1 proteases by GW0385 and other arylsulfonamides"
    Hanlon, MH; Porter, DJT; Furfine, ES; Spaltenstein, A; Carter, HL; Danger, D; Shu, AYL; Kaldor, IW; Miller, JF; Samano, VA (2004)
    Biochemistry 43(45), 14500-14507.
  75. "Staphylococcus aureus AgrA binding to the RNAIII-agr regulatory region"
    Koenig, RL; Ray, JL; Maleki, SJ; Smeltzer, MS; Hurlburt, BK (2004)
    J. Bacteriol. 186(22), 7549-7555.
  76. "Synthesis and evaluation of new substrate analogues of Streptomyces R61 DD-peptidase: Dissection of a specific ligand"
    Nagarajan, R; Pratt, RF (2004)
    J. Org. Chem. 69(22), 7472-7478.
  77. "A fluorescent alpha-factor analogue exhibits multiple steps on binding to its G protein coupled receptor in yeast"
    Bajaj, A; Celic, A; Ding, FX; Naider, F; Becker, JM; Dumont, ME (2004)
    Biochemistry 43(42), 13564-13578.
  78. "Design, synthesis, and evaluation of acyclic C-nucleoside and N-methylated derivatives of the ribitylaminopyrimidine substrate of lumazine synthase as potential enzyme inhibitors and mechanistic probes"
    Chen, JH; Sambaiah, T; Illarionov, B; Fischer, M; Bacher, A; Cushman, M (2004)
    J. Org. Chem. 69(21), 6996-7003.
  79. "IspH protein of Escherichia coli: Studies on iron-sulfur cluster implementation and catalysis"
    Grawert, T; Kaiser, J; Zepeck, F; Laupitz, R; Hecht, S; Amslinger, S; Schramek, N; Schleicher, E; Weber, S; Haslbeck, M; Buchner, J; Rieder, C; Arigoni, D; Bacher, A; Eisenreich, W; Rohdich, F (2004)
    J. Am. Chem. Soc. 126(40), 12847-12855.
  80. "Transcription factors IIF and US and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism"
    Zhang, CF; Burton, ZF (2004)
    J. Mol. Biol. 342(4), 1085-1099.
  81. "Cobalt(II) and cadmium(II) chelates with nitrogen donors and O-2 bonding to Co(II) derivatives"
    Melchior, A; Peressini, S; Portanova, R; Sangregorio, C; Tavagnacco, C; Tolazzi, M (2004)
    Inorg. Chim. Acta 357(12), 3473-3482.
  82. "Adapter protein for site-specific conjugation of payloads for targeted drug delivery"
    Backer, MV; Gaynutdinov, TI; Patel, V; Jehning, BT; Myshkin, E; Backer, JM (2004)
    Bioconjugate Chem. 15(5), 1021-1029.
  83. "Cryptosporidium parvum IMP dehydrogenase - Identification of functional, structural, and dynamic properties that can be exploited for drug design"
    Umejiego, NN; Li, C; Riera, T; Hedstrom, L; Striepen, B (2004)
    J. Biol. Chem. 279(39), 40320-40327.
  84. "Influence of substrate composition on the helicase activity of transcription termination factor Rho: Reduced processivity of unwinding of RNA-DNA Rho hexamers during hybrid regions"
    Walmacq, C; Rahmouni, AR; Boudvillain, M (2004)
    J. Mol. Biol. 342(2), 403-420.
  85. "Cloning and characterization of a Streptomyces antibioticus ATCC11891 cyclophilin related to Gram negative bacteria cyclophilins"
    Manteca, A; Kamphausen, T; Fanghanel, J; Fischer, G; Sanchez, J (2004)
    FEBS Lett. 572(1-3), 19-26.
  86. "Rate-limiting steps in oxidations catalyzed by rabbit cytochrome P450 1A2"
    Guengerich, FP; Krauser, JA; Johnson, WW (2004)
    Biochemistry 43(33), 10775-10788.
  87. "A proposed reference method for plasminogen activators that enables calculation of enzyme activities in S1 units"
    Longstaff, C; Whitton, CM (2004)
    J. Thromb. Haemost. 2(8), 1416-1421.
  88. "Validation and characterization of uninhibited enzyme kinetics performed in multiwell plates"
    Perdicakis, B; Montgomery, HJ; Guillemette, JG; Jervis, E (2004)
    Anal. Biochem. 332(1), 122-136.
  89. "Enzyme microarrays: On-chip determination of inhibition constants based on affinity-label defection of enzymatic activity"
    Eppinger, J; Funeriu, DP; Miyake, M; Denizot, L; Miyake, J (2004)
    Angew. Chem.-Int. Edit. 43(29), 3806-3810.
  90. "Identification and activity of a series of azole-based compounds with lactate dehydrogenase-directed anti-malarial activity"
    Cameron, A; Read, J; Tranter, R; Winter, VJ; Sessions, RB; Brady, RL; Vivas, L; Easton, A; Kendrick, H; Croft, SL; Barros, D; Lavandera, JL; Martin, JJ; Risco, F; Garcia-Ochoa, S; Gamo, FJ; Sanz, L; Leon, L; Ruiz, JR; Gabarro, R; Mallo, A; de las Heras, FG (2004)
    J. Biol. Chem. 279(30), 31429-31439.
  91. "Slow-binding inhibition - A theoretical and practical course for students"
    Golicnik, M; Stojan, J (2004)
    Biochem. Mol. Biol. Educ. 32(4), 228-235.
  92. "Ubc9-induced inhibition. of diadenosine triphosphate hydrolase activity of the putative tumor suppressor protein Fhit"
    Golebiowski, F; Szulc, A; Szutowicz, A; Pawelczyk, T (2004)
    Arch. Biochem. Biophys. 428(2), 160-164.
  93. "The merits of bipartite transition-state mimics for inhibition of uracil DNA glycosylase"
    Jiang, YL; Cao, CY; Stivers, JT; Song, FH; Ichikawa, Y (2004)
    Bioorganic Chem. 32(4), 244-262.
  94. "Detailed kinetic studies of an aggregating inhibitor; Inhibition of phosphomannomutase/phosphoglucomutase by Disperse Blue 56"
    Liu, HY; Wang, ZH; Regni, C; Zou, XQ; Tipton, PA (2004)
    Biochemistry 43(27), 8662-8669.
  95. "Phosphorylation and binding interactions of CheY studied by use of badan-labeled protein"
    Stewart, RC; VanBruggen, R (2004)
    Biochemistry 43(27), 8766-8777.
  96. "Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase"
    Serebrov, V; Pyle, AM (2004)
    Nature 430(6998), 476-480.
  97. "The perfect penicillin? Inhibition of a bacterial DD-peptidase by peptidoglycan-mimetic beta-lactams"
    Josephine, HR; Kumar, I; Pratt, RF (2004)
    J. Am. Chem. Soc. 126(26), 8122-8123.
  98. "Biosynthesis of isoprenoids - A bifunctional IspDF enzyme from Campylobacter jejuni"
    Gabrielsen, M; Rohdich, F; Eisenreich, W; Grawert, T; Hecht, S; Bacher, A; Hunter, WN (2004)
    Eur. J. Biochem. 271(14), 3028-3035.
  99. "Biochemical characterization of Bacillus subtilis type II isopentenyl diphosphate isomerase, and phylogenetic distribution of isoprenoid biosynthesis pathways"
    Laupitz, R; Hecht, S; Amslinger, S; Zepeck, F; Kaiser, J; Richter, G; Schramek, N; Steinbacher, S; Huber, R; Arigoni, D; Bacher, A; Eisenreich, W; Rohdich, F (2004)
    Eur. J. Biochem. 271(13), 2658-2669.
  100. "Kinetic and structural characterization of a product complex of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase from Escherichia coli"
    Garcon, A; Bermingham, A; Lian, LY; Derrick, JP (2004)
    Biochem. J. 380(Pt. Part 3), 867-873.
  101. "Alanine racemase free energy profiles from global analyses of progress curves"
    Spies, MA; Woodward, JJ; Watnik, MR; Toney, MD (2004)
    J. Am. Chem. Soc. 126(24), 7464-7475.
  102. "Structural determinants of substrate binding to Bacillus cereus metallo-beta-lactamase"
    Rasia, RM; Vila, AJ (2004)
    J. Biol. Chem. 279(25), 26046-26051.
  103. "Hg2+-selective fluorogenic chemosensor derived from 8-aminoquinoline"
    Kim, YH; Youk, JS; Moon, SY; Choe, JI; Chang, SK (2004)
    Chem. Lett. 33(6), 702-703.
  104. "Toward better antibiotics: Crystallographic studies of a novel class of DD-peptidase/beta-lactamase inhibitors"
    Silvaggi, NR; Kaur, K; Adediran, SA; Pratt, RF; Kelly, JA (2004)
    Biochemistry 43(22), 7046-7053.
  105. "Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA"
    Byrd, AK; Raney, KD (2004)
    Nat. Struct. Mol. Biol. 11(6), 531-538.
  106. "Catalysis of proline-directed protein phosphorylation by peptidyl-prolyl cis/trans isomerases"
    Weiwad, M; Werner, A; Rucknagel, P; Schierhorn, A; Kullertz, G; Fischer, G (2004)
    J. Mol. Biol. 339(3), 635-646.
  107. "Mixed nitrogen/oxygen ligand affinities for bipositive metal ions and dioxygen binding to cobalt(II) complexes"
    Del Piero, S; Melchior, A; Polese, P; Portanova, R; Tolazzi, M (2004)
    Dalton Trans. (9), 1358-1365.
  108. "Crystal structure to 1.7 angstrom of the Escherichia coli pyrimidine nucleoside hydrolase YeiK, a novel candidate for cancer gene therapy"
    Giabbai, B; Degano, M (2004)
    Structure 12(5), 739-749.
  109. "A1a226 to Gly and Ser 189 to Asp mutations convert rat chymotrypsin B to a trypsin-like protease"
    Jelinek, B; Antal, J; Venekei, I; Graf, L (2004)
    Protein Eng. Des. Sel. 17(2), 127-131.
  110. "Formation and reduction of aryl and heterocyclic nitroso compounds and significance in the flux of hydroxylamines"
    Kim, DH; Kadlubar, FF; Teitel, CH; Guengerich, FP (2004)
    Chem. Res. Toxicol. 17(4), 529-536.
  111. "Substitution of the conserved Arg-Tyr dyad selectively disrupts the hydrolysis phase of the IMP dehydrogenase reaction"
    Schlippe, YVG; Riera, TV; Seyedsayamdost, MR; Hedstrom, L (2004)
    Biochemistry 43(15), 4511-4521.
  112. "Formation of factors IXa and Xa by the extrinsic pathway - Differential regulation by tissue factor pathway inhibitor and antithrombin III"
    Lu, G; Broze, GJ; Krishnaswamy, S (2004)
    J. Biol. Chem. 279(17), 17241-17249.
  113. "alpha(2)-Macroglobulin is a novel substrate for ADAMTS-4 and ADAMTS-5 and represents an endogenous inhibitor of these enzymes"
    Tortorella, MD; Arner, EC; Hills, R; Easton, A; Korte-Sarfaty, J; Fok, K; Wittwer, AJ; Liu, RQ; Malfait, AM (2004)
    J. Biol. Chem. 279(17), 17554-17561.
  114. "The Mad2 spindle checkpoint protein has two distinct natively folded states"
    Luo, XL; Tang, ZY; Xia, GH; Wassmann, K; Matsumoto, T; Rizo, J; Yu, HT (2004)
    Nat. Struct. Mol. Biol. 11(4), 338-345.
  115. "Anti-cooperative oxidation of ubiquinol by the yeast cytochrome bc(1) complex"
    Covian, R; Gutierrez-Cirlos, EB; Trumpower, BL (2004)
    J. Biol. Chem. 279(15), 15040-15049.
  116. "Bromamine decomposition kinetics in aqueous solutions"
    Lei, HX; Marinas, BJ; Minear, RA (2004)
    Environ. Sci. Technol. 38(7), 2111-2119.
  117. "Mechanistic study of the hydrolysis of nitrocefin mediated by B.cereus metallo-beta-lactamase"
    Rasia, RM; Vila, AJ (2003)
    Arkivoc (Pt. Part 10), 507-516.
  118. "Pre-steady-state kinetics shows differences in processing of various DNA lesions by Escherichia coli formamidopyrimidine-DNA glycosylase"
    Koval, VV; Kuznetsov, NA; Zharkov, DO; Ishchenko, AA; Douglas, KT; Nevinsky, GA; Fedorova, OS (2004)
    Nucleic Acids Res. 32(3), 926-935.
  119. "Molecular characterization of Ancylostoma ceylanicum Kunitz-type serine protease inhibitor: Evidence for a role in hookworm-associated growth delay"
    Chu, D; Bungiro, RD; Ibanez, M; Harrison, LM; Campodonico, E; Jones, BF; Mieszczanek, J; Kuzmic, P; Cappello, M (2004)
    Infect. Immun. 72(4), 2214-2221.
  120. "Same fold with different mobility: Backbone dynamics of small protease inhibitors from the desert locust, Schistocerca gregaria"
    Szenthe, B; Gaspari, Z; Nagy, A; Perczel, A; Graf, L (2004)
    Biochemistry 43(12), 3376-3384.
  121. "Reductive elimination of aryl halides upon addition of hindered alkylphosphines to dimeric arylpalladium(II) halide complexes"
    Roy, AH; Hartwig, JF (2004)
    Organometallics 23(7), 1533-1541.
  122. "Kinetics of turnover of cefotaxime by the Enterobacter cloacae P99 and GCl beta-lactamases: Two free enzyme forms of the P99 beta-lactamase detected by a combination of pre- and post-steady state kinetics"
    Kumar, S; Adediran, SA; Nukaga, M; Pratt, RF (2004)
    Biochemistry 43(9), 2664-2672.
  123. "Chromoionophoric recognition of alkylamines by nitro derivative of calix[4]arene-crown-5 ether"
    Kim, JH; Hwang, AR; Choe, JI; Chang, SK (2004)
    Bull. Korean Chem. Soc. 25(2), 301-303.
  124. "Interaction between non-heme iron of lipoxygenases and cumene hydroperoxide: Basis for enzyme activation, inactivation, and inhibition"
    Vahedi-Faridi, A; Brault, PA; Shah, P; Kim, YW; Dunham, WR; Funk, MO (2004)
    J. Am. Chem. Soc. 126(7), 2006-2015.
  125. "Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme"
    Zamel, R; Poon, A; Jaikaran, D; Andersen, A; Olive, J; De Abreu, D; Collins, RA (2004)
    Proc. Natl. Acad. Sci. U. S. A. 101(6), 1467-1472.
  126. "A water-soluble m-phenylene ethynylene foldamer"
    Stone, MT; Moore, JS (2004)
    Org. Lett. 6(4), 469-472.
  127. "Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase"
    Blaszczyk, J; Li, Y; Wu, Y; Shi, GB; Ji, XH; Yan, HG (2004)
    Biochemistry 43(6), 1469-1477.
  128. "Kinetics of multisubunit RNA polymerases: Experimental methods and data analysis"
    Holmes, SF; Foster, JE; Erie, DA (2003)
    Methods Enzymol. 371, 71-+.
  129. "Assay of transient state kinetics of RNA polymerase II elongation"
    Nedialkov, YA; Gong, XQ; Yamaguchi, Y; Handa, H; Burton, ZF (2003)
    Methods Enzymol. 371, 252-264.
  130. "Design, synthesis, and evaluation of 9-D-ribitylamino-1,3,7,9-tetrahydro-2,6,8-purinetriones bearing alkyl phosphate and alpha,alpha-difluorophosphonate substituents as inhibitors of riboflavin synthase and lumazine synthase"
    Cushman, M; Sambaiah, T; Jin, GY; Illarionov, B; Fischer, M; Bacher, A (2004)
    J. Org. Chem. 69(3), 601-612.
  131. "Fast folding of the HIV-1 and SIV gp41 six-helix bundles"
    Marti, DN; Bjelic, S; Lu, M; Bosshard, HR; Jelesarov, I (2004)
    J. Mol. Biol. 336(1), 1-8.
  132. "Association and dissociation kinetics for CheY interacting with the P2 domain of CheA"
    Stewart, RC; Van Bruggen, R (2004)
    J. Mol. Biol. 336(1), 287-301.
  133. "Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp - I. Two distinct activities for individual ATP sites in the gamma complex"
    Williams, CR; Snyder, AK; Kuzmic, P; O'Donnell, M; Bloom, LB (2004)
    J. Biol. Chem. 279(6), 4376-4385.
  134. "Monomeric and dimeric bZIP transcription factor GCN4 bind at the same rate to their target DNA site"
    Cranz, S; Berger, C; Baici, A; Jelesarov, I; Bosshard, HR (2004)
    Biochemistry 43(3), 718-727.
  135. "Peptide ketobenzoxazole inhibitors bound to cathepsin K"
    McGrath, ME; Sprengeler, PA; Hill, CM; Martichonok, V; Cheung, H; Somoza, JR; Palmer, JT; Janc, JW (2003)
    Biochemistry 42(51), 15018-15028.
  136. "Oxygenation reaction of Co(trien)(2+) complex in dimethylsulfoxide and the aerobic oxidation of 2,6-di-tert-butylphenol catalyzed by Co(II)-amine complexes"
    Comuzzi, C; Melchior, A; Polese, P; Portanova, R; Tolazzi, M (2003)
    Inorg. Chim. Acta 355, 57-63.
  137. "Differential modes of recognition in N peptide-boxB complexes"
    Austin, RJ; Xia, TB; Ren, JS; Takahashi, TT; Roberts, RW (2003)
    Biochemistry 42(50), 14957-14967.
  138. "The total quasi-steady-state approximation is valid for reversible enzyme kinetics"
    Tzafriri, AR; Edelman, ER (2004)
    J. Theor. Biol. 226(3), 303-313.
  139. "Inhibition of fructose-1,6-bisphosphatase by a new class of allosteric effectors"
    Choe, JY; Nelson, SW; Arienti, KL; Axe, FU; Collins, TL; Jones, TK; Kimmich, RDA; Newman, MJ; Norvell, K; Ripka, WC; Romano, SJ; Short, KM; Slee, DH; Fromm, HJ; Honzatko, RB (2003)
    J. Biol. Chem. 278(51), 51176-51183.
  140. "Cobalt(II) dioxygen carriers based on simple diamino ligands: Kinetic and ab initio studies"
    Comuzzi, C; Melchior, A; Polese, P; Portanova, R; Tolazzi, M (2003)
    Inorg. Chem. 42(25), 8214-8222.
  141. "Analysis of the kinetic mechanism of haloalkane conjugation by mammalian theta-class glutathione transferases"
    Guengerich, FP; McCormick, WA; Wheeler, JB (2003)
    Chem. Res. Toxicol. 16(11), 1493-1499.
  142. "Chimeric ribonuclease as a source of human adapter protein for targeted drug delivery"
    Gaynutdinov, TI; Myshkin, E; Backer, JM; Backer, MV (2003)
    Protein Eng. 16(10), 771-775.
  143. "Presteady state kinetic analysis of riboflavin synthase"
    Illarionov, B; Haase, I; Bacher, A; Fischer, M; Schramek, N (2003)
    J. Biol. Chem. 278(48), 47700-47706.
  144. "DNA-binding and oligomerization studies of the manganese(II) metalloregulatory protein MntR from Bacillus subtilis"
    Lieser, SA; Davis, TC; Helmann, JD; Cohen, SM (2003)
    Biochemistry 42(43), 12634-12642.
  145. "Kinetic analysis of the 4-methylideneimidazole-5-one-containing tyrosine aminomutase in enediyne antitumor antibiotic C-1027 biosynthesis"
    Christenson, SD; Wu, WM; Spies, MA; Shen, B; Toney, MD (2003)
    Biochemistry 42(43), 12708-12718.
  146. "Reactivity of acrylate-terminated Au nanoparticles: Suppressed intramolecular catalysis and lack of cooperative effect"
    Koenig, S; Chechik, V (2003)
    Langmuir 19(22), 9511-9517.
  147. "Bacteriophage T4Dam (DNA-(adenine-N-6)-methyltransferase) - Evidence for two distinct stages of methylation under single turnover conditions"
    Malygin, EG; Lindstrom, WM; Zinoviev, VV; Evdokimov, AA; Schlagman, SL; Reich, NO; Hattman, S (2003)
    J. Biol. Chem. 278(43), 41749-41755.
  148. "A model for the activation of plasma membrane calcium pump isoform 4b by calmodulin"
    Penheiter, AR; Bajzer, E; Filoteo, AG; Thorogate, R; Torok, K; Caride, AJ (2003)
    Biochemistry 42(41), 12115-12124.
  149. "Zinc fingers can act as Zn2+ sensors to regulate transcriptional activation domain function"
    Bird, AJ; McCall, K; Kramer, M; Blankman, E; Winge, DR; Eide, DJ (2003)
    Embo J. 22(19), 5137-5146.
  150. "Fatty acid-binding proteins inhibit hydration of epoxyeicosatrienoic acids by soluble epoxide hydrolase"
    Widstrom, RL; Norris, AW; Van Der Veer, J; Spector, AA (2003)
    Biochemistry 42(40), 11762-11767.
  151. "Downstream DNA sequence effects on transcription elongation - Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion"
    Holmes, SF; Erie, DA (2003)
    J. Biol. Chem. 278(37), 35597-35608.
  152. "Pre-steady-state and steady-state kinetic analysis of E-coli class I ribonucleotide reductase"
    Ge, J; Yu, GX; Ator, MA; Stubbe, J (2003)
    Biochemistry 42(34), 10071-10083.
  153. "On the substrate specificity of bacterial DD-peptidases: evidence from two series of peptidoglycan-mimetic peptides"
    Anderson, JW; Adediran, SA; Charlier, P; Nguyen-Disteche, M; Frere, JM; Nicholas, RA; Pratt, RF (2003)
    Biochem. J. 373(Pt. Part 3), 949-955.
  154. "Biochemical and functional analyses of the Mip protein: Influence of the N-terminal half and of peptidylprolyl isomerase activity on the virulence of Legionella pneumophila"
    Kohler, R; Fanghanel, J; Konig, B; Luneberg, E; Frosch, M; Rahfeld, JU; Hilgenfeld, R; Fischer, G; Hacker, J; Steinert, M (2003)
    Infect. Immun. 71(8), 4389-4397.
  155. "Alkaline proteinase inhibitor of Pseudomonas aeruginosa - A mutational and molecular dynamics study of the role of N-terminal residues in the inhibition of Pseudomonas alkaline proteinase"
    Feltzer, RE; Trent, JO; Gray, RD (2003)
    J. Biol. Chem. 278(28), 25952-25957.
  156. "Proflavine acts as a Rev inhibitor by targeting the high-affinity Rev binding site of the Rev responsive element of HIV-1"
    DeJong, ES; Chang, CE; Gilson, MK; Marino, JP (2003)
    Biochemistry 42(26), 8035-8046.
  157. "Steady-state and pre-steady-state kinetic analysis of halopropane conversion by a Rhodococcus haloalkane dehalogenase"
    Bosma, T; Pikkemaat, MG; Kingma, J; Dijk, J; Janssen, DB (2003)
    Biochemistry 42(26), 8047-8053.
  158. "Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate binding module, TmCBM27"
    Boraston, AB; Revett, TJ; Boraston, CM; Nurizzo, D; Davies, GJ (2003)
    Structure 11(6), 665-675.
  159. "New substrates for beta-lactam-recognizing enzymes: Aryl malonamates"
    Cabaret, D; Adediran, SA; Pratt, RF; Wakselman, M (2003)
    Biochemistry 42(22), 6719-6725.
  160. "Preparation and characterization of a 5 '-deazaFAD T491V NADPH-cytochrome P450 reductase"
    Zhang, HM; Gruenke, L; Saribas, AS; Im, SC; Shen, AL; Kasper, CB; Waskell, L (2003)
    Biochemistry 42(22), 6804-6813.
  161. "Mining HIV dynamics using independent component analysis"
    Draghici, S; Graziano, F; Kettoola, S; Sethi, I; Towfic, G (2003)
    Bioinformatics 19(8), 981-986.
  162. "Humanized docking system for assembly of targeting drug delivery complexes"
    Backer, MV; Gaynutdinov, TI; Gorshkova, II; Crouch, RJ; Hu, T; Aloise, R; Arab, M; Przekop, K; Backer, JA (2003)
    J. Control. Release 89(3), 499-511.
  163. "NTP-driven translocation by human RNA polymerase II"
    Nedialkov, YA; Gong, XQ; Hovde, SL; Yamaguchi, Y; Handa, H; Geiger, JH; Yan, HG; Burton, ZF (2003)
    J. Biol. Chem. 278(20), 18303-18312.
  164. "Decorin binds fibrinogen in a Zn2+-dependent interaction"
    Dugan, TA; Yang, VWC; McQuillan, DJ; Hook, M (2003)
    J. Biol. Chem. 278(16), 13655-13662.
  165. "Enzyme I of the phosphotransferase system: Induced-fit protonation of the reaction transition state by Cys-502"
    Garcia-Alles, LF; Alfonso, I; Erni, B (2003)
    Biochemistry 42(16), 4744-4750.
  166. "Structural elements of metal selectivity in metal sensor proteins"
    Pennella, MA; Shokes, JE; Cosper, NJ; Scott, RA; Giedroc, DP (2003)
    Proc. Natl. Acad. Sci. U. S. A. 100(7), 3713-3718.
  167. "The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre"
    Lagunavicius, A; Sasnauskas, G; Halford, SE; Siksnys, V (2003)
    J. Mol. Biol. 326(4), 1051-1064.
  168. "Powering DNA repair through substrate-electrostatic interactions"
    Jiang, YL; Ichikawa, Y; Song, F; Stivers, JT (2003)
    Biochemistry 42(7), 1922-1929.
  169. "Biochemical characterization of interactions between DNA polymerase and single-stranded DNA-binding protein in bacteriophage RB69"
    Sun, SY; Shamoo, Y (2003)
    J. Biol. Chem. 278(6), 3876-3881.
  170. "Inhibition of beta-lactamases by monocyclic acyl phosph(on)ates"
    Kaur, K; Adediran, SA; Lan, MJK; Pratt, RF (2003)
    Biochemistry 42(6), 1529-1536.
  171. "Catalytic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Site-directed mutagenesis and biochemical studies"
    Li, Y; Wu, Y; Blaszczyk, J; Ji, XH; Yan, HG (2003)
    Biochemistry 42(6), 1581-1588.
  172. "SOLVERSTAT: a new utility for multipurpose analysis. An application to the investigation of dioxygenated Co(II) complex formation in dimethylsulfoxide solution"
    Comuzzi, C; Polese, P; Melchior, A; Portanova, R; Tolazzi, M (2003)
    Talanta 59(1), 67-80.
  173. "tmRNA from Thermus thermophilus - Interaction with alanyl-tRNA synthetase and elongation factor Tu"
    Stepanov, VG; Nyborg, J (2003)
    Eur. J. Biochem. 270(3), 463-475.
  174. "Routes to S-nitroso-hemoglobin formation with heme redox and preferential reactivity in the beta subunits"
    Luchsinger, BP; Rich, EN; Gow, AJ; Williams, EM; Stamler, JS; Singel, DJ (2003)
    Proc. Natl. Acad. Sci. U. S. A. 100(2), 461-466.
  175. "The N-terminal domain of the regulatory subunit is sufficient for complete activation of acetohydroxyacid synthase III from Escherichia coli"
    Mendel, S; Vinogradov, M; Vyazmensky, M; Chipman, DM; Barak, Z (2003)
    J. Mol. Biol. 325(2), 275-284.
  176. "Engineering S-protein fragments of bovine ribonuclease A for targeted drug delivery"
    Backer, MV; Gaynutdinov, TI; Aloise, R; Przekop, K; Backer, JM (2002)
    Protein Expr. Purif. 26(3), 455-461.
  177. "Evaluation of similarities in the cis/trans isomerase function of trigger factor and DnaK"
    Schiene-Fischer, C; Habazettl, J; Tradler, T; Fischer, G (2002)
    Biol. Chem. 383(12), 1865-1873.
  178. "Kinetic analysis of R67 dihydrofolate reductase folding: From the unfolded monomer to the native tetramer"
    Bodenreider, C; Kellershohn, N; Goldberg, ME; Mejean, A (2002)
    Biochemistry 41(50), 14988-14999.
  179. "The neutrophil lipocalin NGAL is a bacteriostatic agent that interferes with siderophore-mediated iron acquisition"
    Goetz, DH; Holmes, MA; Borregaard, N; Bluhm, ME; Raymond, KN; Strong, RK (2002)
    Mol. Cell 10(5), 1033-1043.
  180. "Urate oxidase: Single-turnover stopped-flow techniques for detecting two discrete enzyme-bound intermediates"
    Tipton, PA (2002)
    Methods Enzymol. 354, 310-319.
  181. "The role of the factor X activation peptide: A deletion mutagenesis approach"
    Rudolph, AE; Mullane, MP; Porche-Sorbet, R; Daust, HA; Miletich, JP (2002)
    Thromb. Haemost. 88(5), 756-762.
  182. "Kinetic modeling of reactions in heated monosaccharide-casein systems"
    Brands, CMJ; van Boekel, MAJS (2002)
    J. Agric. Food Chem. 50(23), 6725-6739.
  183. "The dual-specific active site of 7,8-diaminopelargonic acid synthase and the effect of the R391A mutation"
    Eliot, AC; Sandmark, J; Schneider, G; Kirsch, JF (2002)
    Biochemistry 41(42), 12582-12589.
  184. "The glucose-specific carrier of the Escherichia coli phosphotransferase system - Synthesis of selective inhibitors and inactivation studies"
    Garcia-Alles, LF; Navdaeva, V; Haenni, S; Erni, B (2002)
    Eur. J. Biochem. 269(20), 4969-4980.
  185. "Incorporation of an amide into 5-phosphonoalkyl-6-D-ribitylaminopyrimidinedione lumazine synthase inhibitors results in an unexpected reversal of selectivity for riboflavin synthase vs lumazine synthase"
    Cushman, M; Yang, DL; Mihalic, JT; Chen, JH; Gerhardt, S; Huber, R; Fischer, M; Kis, K; Bacher, A (2002)
    J. Org. Chem. 67(20), 6871-6877.
  186. "Prothrombinase assembly and S1 site occupation restore the catalytic activity of FXa impaired by mutation at the sodium-binding site"
    Camire, RM (2002)
    J. Biol. Chem. 277(40), 37863-37870.
  187. "Oxidation of methoxyphenethylamines by cytochrome p450 2D6 - Analysis of rate-limiting steps"
    Guengerich, FP; Miller, GP; Hanna, IH; Sato, H; Martin, MV (2002)
    J. Biol. Chem. 277(37), 33711-33719.
  188. "Mutational analysis of the base-flipping mechanism of uracil DNA glycosylase"
    Jiang, YL; Stivers, JT (2002)
    Biochemistry 41(37), 11236-11247.
  189. "Diversity in the oxidation of substrates by cytochrome P450 2D6: Lack of an obligatory role of aspartate 301 - Substrate electrostatic bonding"
    Guengerich, FP; Miller, GP; Hanna, IH; Martin, MV; Leger, S; Black, C; Chauret, N; Silva, JM; Trimble, LA; Yergey, JA; Nicoll-Griffith, DA (2002)
    Biochemistry 41(36), 11025-11034.
  190. "Effect of sequence polymorphism and drug resistance on two HIV-1 Gag processing sites"
    Feher, A; Weber, IT; Bagossi, P; Boross, P; Mahalingam, B; Louis, JM; Copeland, TD; Torshin, IY; Harrison, RW; Tozser, J (2002)
    Eur. J. Biochem. 269(16), 4114-4120.
  191. "Design, synthesis, and evaluation of 6-carboxyalkyl and 6-phosphonoxyalkyl derivatives of 7-oxo-8-ribitylaminolumazines as inhibitors of riboflavin synthase and lumazine synthase"
    Cushman, M; Yang, DL; Gerhardt, S; Huber, R; Fischer, M; Kis, K; Bacher, A (2002)
    J. Org. Chem. 67(16), 5807-5816.
  192. "Structural characterization of distinct alpha 3N and alpha 5 metal sites in the cyanobacterial zinc sensor SmtB"
    VanZile, ML; Chen, XH; Giedroc, DP (2002)
    Biochemistry 41(31), 9765-9775.
  193. "Allosteric negative regulation of smt O/P binding of the zinc sensor, SmtB, by metal ions: A coupled equilibrium analysis"
    VanZile, ML; Chen, XH; Giedroc, DP (2002)
    Biochemistry 41(31), 9776-9786.
  194. "Sugar recognition by the glucose and mannose permeases of Escherichia coli. Steady-state kinetics and inhibition studies"
    Garcia-Alles, LF; Zahn, A; Erni, B (2002)
    Biochemistry 41(31), 10077-10086.
  195. "Analysis of copper complex lability using Cu-64-equilibration techniques and free-ion selective radiotracer extraction"
    van Doornmalen, J; Wolterbeek, HT; de Goeij, JJM (2002)
    Anal. Chim. Acta 464(1), 141-152.
  196. "Metabolomics: quantification of intracellular metabolite dynamics"
    Buchholz, A; Hurlebaus, J; Wandrey, C; Takors, R (2002)
    Biomol. Eng. 19(1), 5-15.
  197. "High-level production of D-mannitol with membrane cell-recycle bioreactor"
    von Weymarn, N; Kiviharju, K; Leisola, M (2002)
    J. Ind. Microbiol. Biotechnol. 29(1), 44-49.
  198. "Nematode anticoagulant protein c2 reveals a site on factor Xa that is important for macromolecular substrate binding to human prothrombinase."
    Buddai, SK; Toulokhonova, L; Bergum, PW; Vlasuk, GP; Krishnaswamy, S (2002)
    J. Biol. Chem. 277(29), 26689-26698.
  199. "Timing of epimerization and condensation reactions in nonribosomal peptide assembly lines: Kinetic analysis of phenylalanine activating elongation modules of tyrocidine synthetase B"
    Luo, LS; Kohli, RM; Onishi, M; Linne, U; Marahiel, MA; Walsh, CT (2002)
    Biochemistry 41(29), 9184-9196.
  200. "Chemical transformation is not rate-limiting in the reaction catalyzed by Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase"
    Li, Y; Gong, YC; Shi, GB; Blaszczyk, J; Ji, XH; Yan, HG (2002)
    Biochemistry 41(27), 8777-8783.
  201. "F-1-ATPase changes its conformations upon phosphate release"
    Masaike, T; Muneyuki, E; Noji, H; Kinosita, K; Yoshida, M (2002)
    J. Biol. Chem. 277(24), 21643-21649.
  202. "Elucidation of primary (alpha N-3) and vestigial (alpha(5)) heavy metal-binding sites in Staphylococcus aureus pI258 CadC: Evolutionary implications for metal ion selectivity of ArsR/SmtB metal sensor proteins"
    Busenlehner, LS; Weng, TC; Penner-Hahn, JE; Giedroc, DP (2002)
    J. Mol. Biol. 319(3), 685-701.
  203. "Reaction of aflatoxin B-1 oxidation products with lysine"
    Guengerich, FP; Arneson, KO; Williams, KM; Deng, ZW; Harris, TM (2002)
    Chem. Res. Toxicol. 15(6), 780-792.
  204. "C-2 epimer formation of tetrose, pentose and hexose sugars by xylose isomerase"
    Vuolanto, A; Pastinen, O; Schoemaker, HE; Leisola, M (2002)
    Biocatal. Biotransform. 20(4), 235-240.
  205. "The hsp70 chaperone DnaK is a secondary amide peptide bond cis-trans isomerase"
    Schiene-Fischer, C; Habazettl, J; Schmid, FX; Fischer, G (2002)
    Nat. Struct. Biol. 9(6), 419-424.
  206. "Synthesis and self-association of an imine-containing m-phenylene ethynylene macrocycle"
    Zhao, DH; Moore, JS (2002)
    J. Org. Chem. 67(11), 3548-3554.
  207. "Inhibition of uracil DNA glycosylase by an oxacarbenium ion mimic"
    Jiang, YL; Ichikawa, Y; Stivers, JT (2002)
    Biochemistry 41(22), 7116-7124.
  208. "The size-selective synthesis of folded oligomers by dynamic templation"
    Nishinaga, T; Tanatani, A; Oh, KC; Moore, JS (2002)
    J. Am. Chem. Soc. 124(21), 5934-5935.
  209. "Formation and structure of 1 : 1 complexes between aryl hydroxamic acids and vanadate at neutral pH"
    Bell, JH; Pratt, RF (2002)
    Inorg. Chem. 41(10), 2747-2753.
  210. "Selective inhibition of the C-domain of angiotensin I converting enzyme by bradykinin potentiating peptides"
    Cotton, J; Hayashi, MAF; Cuniasse, P; Vazeux, G; Ianzer, D; De Camargo, ACM; Dive, V (2002)
    Biochemistry 41(19), 6065-6071.
  211. "Characterization of the protrimer intermediate in the folding pathway of the interdigitated beta-helix tailspike protein"
    Benton, CB; King, J; Clark, PL (2002)
    Biochemistry 41(16), 5093-5103.
  212. "Hydrolysis of the 5 '-p-nitrophenyl ester of TMP by the proofreading exonuclease (epsilon) subunit of Escherichia coli DNA polymerase III"
    Hamdan, S; Bulloch, EM; Thompson, PR; Beck, JL; Yang, JY; Crowther, JA; Lilley, PE; Carr, PD; Ollis, DL; Brown, SE; Dixon, NE (2002)
    Biochemistry 41(16), 5266-5275.
  213. "Characterization of a metalloregulatory bismuth(III) site in Staphylococcus aureus pI258 CadC repressor"
    Busenlehner, LS; Apuy, JL; Giedroc, DP (2002)
    J. Biol. Inorg. Chem. 7(4-5), 551-559.
  214. "Mechanism of inhibition of the beta-lactamase of Enterobacter cloacae P99 by 1 : 1 complexes of vanadate with hydroxamic acid"
    Bell, JH; Pratt, RF (2002)
    Biochemistry 41(13), 4329-4338.
  215. "Candida guilliermondii grows on rare pentoses - implications for production of pure xylitol"
    Granstrom, T; Airaksinen, U; Wu, XY; Leisola, M (2002)
    Biotechnol. Lett. 24(7), 507-510.
  216. "Identification of residues critical for activity of the wound-induced leucine aminopeptidase (LAP-A) of tomato"
    Gu, YQ; Walling, LL (2002)
    Eur. J. Biochem. 269(6), 1630-1640.
  217. "The contribution of factor Xa to exosite-dependent substrate recognition by prothrombinase"
    Wilkens, M; Krishnaswamy, S (2002)
    J. Biol. Chem. 277(11), 9366-9374.
  218. "Why OrfY? Characterization of MMOD, a long overlooked component of the soluble methane monooxygenase from Methylococcus capsulatus (Bath)"
    Merkx, M; Lippard, SJ (2002)
    J. Biol. Chem. 277(8), 5858-5865.
  219. "Molecular characterization of Ancylostoma inhibitors of coagulation factor Xa - Hookworm anticoagulant activity in vitro predicts parasite bloodfeeding in vivo"
    Harrison, LM; Nerlinger, A; Bungiro, RD; Cordova, JL; Kuzmic, P; Cappello, M (2002)
    J. Biol. Chem. 277(8), 6223-6229.
  220. "Concerted and stepwise dehydration mechanisms observed in wild-type and mutated Escherichia coli dTDP-glucose 4,6-dehydratase"
    Hegeman, AD; Gross, JW; Frey, PA (2002)
    Biochemistry 41(8), 2797-2804.
  221. "HIV-1 protease: Characterization of a catalytically competent enzyme-substrate intermediate"
    Porter, DJT; Hanlon, MH; Furfine, ES (2002)
    Biochemistry 41(4), 1302-1307.
  222. "Foldamers as dynamic receptors: Probing the mechanism of molecular association between helical oligomers and rodlike ligands"
    Tanatani, A; Hughes, TS; Moore, JS (2001)
    Angew. Chem.-Int. Edit. 41(2), 325-+.
  223. "Misincorporation and stalling at O-6-methylguanine and O-6-benzylguanine: Evidence for inactive polymerase complexes"
    Woodside, AM; Guengerich, FP (2002)
    Biochemistry 41(3), 1039-1050.
  224. "Inhibition of bacteriophage lambda protein phosphatase by organic and oxoanion inhibitors"
    Reiter, NJ; White, DJ; Rusnak, F (2002)
    Biochemistry 41(3), 1051-1059.
  225. "Wettability of heterogeneous substrates"
    Voue, M; Bauthier, C; Vega, MJ; De Connick, J (2001)
    Phys. Status Solidi A-Appl. Res. 188(4), 1345-1351.
  226. "Arp2/3 complex requires hydrolyzable ATP for nucleation of new actin filaments"
    Dayel, MJ; Holleran, EA; Mullins, RD (2001)
    Proc. Natl. Acad. Sci. U. S. A. 98(26), 14871-14876.
  227. "Design, synthesis, and evaluation of 9-D-ribityl-1,3,7-trihydro-2,6,8-purinetrione, a potent inhibitor of riboflavin synthase and lumazine synthase"
    Cushman, M; Yang, DL; Kis, K; Bacher, A (2001)
    J. Org. Chem. 66(25), 8320-8327.
  228. "The conserved methionine residue of the metzincins: A site-directed mutagenesis study"
    Hege, T; Baumann, U (2001)
    J. Mol. Biol. 314(2), 181-186.
  229. "Protease C of Erwinia chrysanthemi: The crystal structure and role of amino acids Y228 and E189"
    Hege, T; Baumann, U (2001)
    J. Mol. Biol. 314(2), 187-193.
  230. "Cargo delivery kinetics of cell-penetrating peptides"
    Hallbrink, M; Floren, A; Elmquist, A; Pooga, M; Bartfai, T; Langel, U (2001)
    Biochim. Biophys. Acta-Biomembr. 1515(2), 101-109.
  231. "Substrate recognition and selection by the initiation module PheATE of gramicidin S synthetase"
    Luo, LS; Burkart, MD; Stachelhaus, T; Walsh, CT (2001)
    J. Am. Chem. Soc. 123(45), 11208-11218.
  232. "Histidine 90 function in 4-chlorobenzoyl-coenzyme a dehalogenase catalysis"
    Zhang, WH; Wei, YS; Luo, LS; Taylor, KL; Yang, G; Dunaway-Mariano, D; Benning, MM; Holden, HM (2001)
    Biochemistry 40(45), 13474-13482.
  233. "Kinetic analysis of the action of P-site analogs"
    Dessauer, CW (2002)
    Methods Enzymol. 345, 112-126.
  234. "Mechanism of inhibition of the class C beta-lactamase of Enterobacter cloacae P99 by cyclic acyl phosph(on)ates: Rescue by return"
    Kaur, K; Lan, MJK; Pratt, RF (2001)
    J. Am. Chem. Soc. 123(43), 10436-10443.
  235. "Actinopolyspora halophila has two separate pathways for betaine synthesis"
    Nyyssola, A; Leisola, M (2001)
    Arch. Microbiol. 176(4), 294-300.
  236. "Inverse acyl phosph(on)ates: Substrates or inhibitors of beta-lactam-recognizing enzymes?"
    Morrison, MJ; Li, NX; Pratt, RF (2001)
    Bioorganic Chem. 29(5), 271-281.
  237. "Effectors of HIV-1 protease peptidolytic activity"
    Porter, DJT; Hanlon, MH; Carter, LH; Danger, DP; Furfine, ES (2001)
    Biochemistry 40(37), 11131-11139.
  238. "Kinetic competence of the cADP-ribose-CD38 complex as an intermediate in the CD38/NAD(+) glycohydrolase-catalysed reactions: implication for CD38 signalling"
    Cakir-Kiefer, I; Muller-Steffner, H; Oppenheimer, N; Schuber, F (2001)
    Biochem. J. 358(Pt. Part 2), 399-406.
  239. "Conjugation of haloalkanes by bacterial and mammalian glutathione transferases: Mono- and vicinal dihaloethanes"
    Wheeler, JB; Stourman, NV; Armstrong, RN; Guengerich, FP (2001)
    Chem. Res. Toxicol. 14(8), 1107-1117.
  240. "Characterization of the binding of deuteroporphyrin IX to the magnesium chelatase H subunit and spectroscopic properties of the complex"
    Karger, GA; Reid, JD; Hunter, CN (2001)
    Biochemistry 40(31), 9291-9299.
  241. "Characterisation of the structure of ocr, the gene 0.3 protein of bacteriophage T7"
    Atanasiu, C; Byron, O; McMiken, H; Sturrock, SS; Dryden, DTF (2001)
    Nucleic Acids Res. 29(14), 3059-3068.
  242. "A kinetic study of competing fragmentation and hydrolyses of phenyl hydrogen alpha-hydroxyiminobenzylphosphonate - a case of acid mediated inhibition of acid catalysis"
    Ta-Shma, R; Schneider, H; Mahajna, M; Katzhendler, J; Breuer, E (2001)
    J. Chem. Soc.-Perkin Trans. 2 (8), 1404-1407.
  243. "Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation"
    Foster, JE; Holmes, SF; Erie, DA (2001)
    Cell 106(2), 243-252.
  244. "The ATPase reaction cycle of yeast DNA topoisomerase II - Slow rates of ATP resynthesis and P-i release"
    Baird, CL; Gordon, MS; Andrenyak, DM; Marecek, JF; Lindsley, JE (2001)
    J. Biol. Chem. 276(30), 27893-27898.
  245. "High enzymatic activity and chaperone function are mechanistically related features of the dimeric E-coli peptidyl-prolyl-isomerase FkpA"
    Ramm, K; Pluckthun, A (2001)
    J. Mol. Biol. 310(2), 485-498.
  246. "Reduction of aflatoxin B-1 dialdehyde by rat and human aldo-keto reductases"
    Guengerich, FP; Cai, HL; McMahon, M; Hayes, JD; Sutter, TR; Groopman, JD; Deng, ZW; Harris, TM (2001)
    Chem. Res. Toxicol. 14(6), 727-737.
  247. "The mechanism of DNA cytosine-5 methylation - Kinetic and mutational dissection of HhaI methyltransferase"
    Vilkaitis, G; Merkiene, E; Serva, S; Weinhold, E; Klimasauskas, S (2001)
    J. Biol. Chem. 276(24), 20924-20934.
  248. "Binding and oxidation of alkyl 4-nitrophenyl ethers by rabbit cytochrome P450 1A2: Evidence for two binding sites"
    Miller, GP; Guengerich, FP (2001)
    Biochemistry 40(24), 7262-7272.
  249. "Examination of donor substrate conversion in yeast transketolase"
    Fiedler, E; Golbik, R; Schneider, G; Tittmann, K; Neef, H; Konig, S; Hubner, G (2001)
    J. Biol. Chem. 276(19), 16051-16058.
  250. "Kinetic analysis of three activated phenylalanyl intermediates generated by the initiation module PheATE of gramicidin S synthetase"
    Luo, LS; Walsh, CT (2001)
    Biochemistry 40(18), 5329-5337.
  251. "Characterization of glycine sarcosine N-methyltransferase and sarcosine dimethylglycine N-methyltransferase"
    Nyyssola, A; Reinikainen, T; Leisola, M (2001)
    Appl. Environ. Microbiol. 67(5), 2044-2050.
  252. "Mechanism of reaction of acyl phosph(on)ates with the beta-lactamase of Enterobacter cloacae P99"
    Kaur, K; Pratt, RF (2001)
    Biochemistry 40(15), 4610-4621.
  253. "Spectroscopic properties of the metalloregulatory Cd(II) and Pb(II) sites of S. aureus pI258 CadC"
    Busenlehner, LS; Cosper, NJ; Scott, RA; Rosen, BP; Wong, MD; Giedroc, DP (2001)
    Biochemistry 40(14), 4426-4436.
  254. "Oxidations of p-alkoxyacylanilides catalyzed by human cytochrome P450 1A2: Structure-activity relationships and simulation of rate constants of individual steps in catalysis"
    Yun, CH; Miller, GP; Guengerich, FP (2001)
    Biochemistry 40(14), 4521-4530.
  255. "Acetohydroxyacid synthase: A proposed structure for regulatory subunits supported by evidence from mutagenesis"
    Mendel, S; Elkayam, T; Sella, C; Vinogradov, V; Vyazmensky, M; Chipman, DM; Barak, Z (2001)
    J. Mol. Biol. 307(1), 465-477.
  256. "Chain length-dependent affinity of helical foldamers for a rodlike guest"
    Tanatani, A; Mio, MJ; Moore, JS (2001)
    J. Am. Chem. Soc. 123(8), 1792-1793.
  257. "Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archael plasmid copy control protein"
    Lipps, G; Stegert, M; Krauss, G (2001)
    Nucleic Acids Res. 29(4), 904-913.
  258. "Kinetic studies of Fos center dot Jun center dot DNA complex formation: DNA binding prior to dimerization"
    Kohler, JJ; Schepartz, A (2001)
    Biochemistry 40(1), 130-142.
  259. "The N-terminal region of cystatin A (stefin A) binds to papain subsequent to the two hairpin loops of the inhibitor. Demonstration of two-step binding by rapid-kinetic studies of cystatin A labeled at the N-terminus with a fluorescent reporter group"
    Estrada, S; Olson, ST; Raub-Segall, E; Bjork, I (2000)
    Protein Sci. 9(11), 2218-2224.
  260. "Degradation of chlortoluron in water disinfection processes: a kinetic study"
    Losito, H; Zambonin, CG; Palmisano, F (2000)
    J. Environ. Monit. 2(6), 582-586.
  261. "Functional roles of the conserved threonine 250 in the target recognition domain of HhaI DNA methyltransferase"
    Vilkaitis, G; Dong, AP; Weinhold, E; Cheng, XD; Klimasauskas, S (2000)
    J. Biol. Chem. 275(49), 38722-38730.
  262. "Characterization of enzymatic processes by rapid mix-quench mass spectrometry: The case of dTDP-glucose 4,6-dehydratase"
    Gross, JW; Hegeman, AD; Vestling, MM; Frey, PA (2000)
    Biochemistry 39(45), 13633-13640.
  263. "X-ray structures of five renin inhibitors bound to saccharopepsin: Exploration of active-site specificity"
    Cronin, NB; Badasso, MO; Tickle, IJ; Dreyer, T; Hoover, DJ; Rosati, RL; Humblet, CC; Lunney, EA; Cooper, JB (2000)
    J. Mol. Biol. 303(5), 745-760.
  264. "The zinc metalloregulatory protein Synechococcus PCC7942 SmtB binds a single zinc ion per monomer with high affinity in a tetrahedral coordination geometry"
    VanZile, ML; Cosper, NJ; Scott, RA; Giedroc, DP (2000)
    Biochemistry 39(38), 11818-11829.
  265. "Mechanism of elementary catalytic steps of pyruvate oxidase from Lactobacillus plantarum"
    Tittmann, K; Golbik, R; Ghisla, S; Hubner, G (2000)
    Biochemistry 39(35), 10747-10754.
  266. "Dynamic hemicarcerands and hemicarceplexes"
    Ro, S; Rowan, SJ; Pease, AR; Cram, DJ; Stoddart, JF (2000)
    Org. Lett. 2(16), 2411-2414.
  267. "Interactions of GroEL/GroES with a heterodimeric intermediate during alpha(2)beta(2) assembly of mitochondrial branched-chain alpha-ketoacid dehydrogenase - cis capping of the native-like 86-kDa intermediate by GroES"
    Song, JL; Wynn, RM; Chuang, DT (2000)
    J. Biol. Chem. 275(29), 22305-22312.
  268. "Alkaline proteinase inhibitor of Pseudomonas aeruginosa - Interaction of native and N-terminally truncated inhibitor proteins with Pseudomonas metalloproteinases"
    Feltzer, RE; Gray, RD; Dean, WL; Pierce, WM (2000)
    J. Biol. Chem. 275(28), 21002-21009.
  269. "Degradation of phytochrome A and the high irradiance response in Arabidopsis: a kinetic analysis"
    Hennig, L; Buche, C; Schafer, E (2000)
    Plant Cell Environ. 23(7), 727-734.
  270. "Characteristics of L-ornithine: 2-oxoacid aminotransferase and potential prenatal diagnosis of gyrate atrophy of the choroid and retina by first trimester chorionic villus sampling"
    Roschinger, W; Endres, W; Shin, YS (2000)
    Clin. Chim. Acta 296(1-2), 91-100.
  271. "Dissecting the nucleotide binding properties of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase with fluorescent 3 '(2)'-o-anthraniloyladenosine 5 '-triphosphate"
    Shi, GB; Gong, YC; Savchenko, A; Zeikus, JG; Xiao, B; Ji, XH; Yan, HG (2000)
    Biochim. Biophys. Acta-Protein Struct. Molec. Enzym. 1478(2), 289-299.
  272. "Mechanism of neomycin and Rev peptide binding to the Rev responsive element of HIV-1 as determined by fluorescence and NMR spectroscopy"
    Lacourciere, KA; Stivers, JT; Marino, JP (2000)
    Biochemistry 39(19), 5630-5641.
  273. "Transient kinetics of ligand binding and role of the C-terminus in the dUTPase from equine infectious anemia virus"
    Nord, J; Kiefer, M; Adolph, HW; Zeppezauer, MM; Nyman, PO (2000)
    FEBS Lett. 472(2-3), 312-316.
  274. "A novel approach to serine protease inhibition: Kinetic characterization of inhibitors whose potencies and selectivities are dramatically enhanced by zinc(II)"
    Janc, JW; Clark, JM; Warne, RL; Elrod, KC; Katz, BA; Moore, WR (2000)
    Biochemistry 39(16), 4792-4800.
  275. "Structural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator"
    Katz, BA; Mackman, R; Luong, C; Radika, K; Martelli, A; Sprengeler, PA; Wang, J; Chan, HD; Wong, L (2000)
    Chem. Biol. 7(4), 299-312.
  276. "Osmotic pressure effects on EcoRV cleavage and binding"
    Wenner, JR; Bloomfield, VA (1999)
    J. Biomol. Struct. Dyn. 17(3), 461-471.
  277. "GroEL/GroES promote dissociation/reassociation cycles of a heterodimeric intermediate during alpha(2)beta(2) protein assembly - Iterative annealing at the quaternary structure level"
    Wynn, RM; Song, JL; Chuang, DT (2000)
    J. Biol. Chem. 275(4), 2786-2794.
  278. "Hydrophilic residues at the apical domain of GroEL contribute to GroES finding but attenuate polypeptide binding"
    Motojima, F; Makio, T; Aoki, K; Makino, Y; Kuwajima, K; Yoshida, M (2000)
    Biochem. Biophys. Res. Commun. 267(3), 842-849.
  279. "Kinetic modelling in food science: a case study on chlorophyll degradation in olives"
    van Boekel, MAJS (2000)
    J. Sci. Food Agric. 80(1), 3-9.
  280. "Microcomputer applications in biochemistry"
    Tsai, CS (2000)
    J. Chem. Educ. 77(2), 219-221.
  281. "Crowding effects on EcoRV kinetics and binding"
    Wenner, JR; Bloomfield, VA (1999)
    Biophys. J. 77(6), 3234-3241.
  282. "Selective antibody-catalyzed solvolysis of endo-2-norbornyl mesylate"
    Ma, LF; Sweet, EH; Schultz, PG (1999)
    J. Am. Chem. Soc. 121(43), 10227-10228.
  283. "Substrate channeling"
    Spivey, HO; Ovadi, J (1999)
    Methods 19(2), 306-321.
  284. "Testing of kinetic models: usefulness of the multiresponse approach as applied to chlorophyll degradation in foods"
    van Boekel, MAJS (1999)
    Food Res. Int. 32(4), 261-269.
  285. "Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase"
    Drohat, AC; Jagadeesh, J; Ferguson, E; Stivers, JT (1999)
    Biochemistry 38(37), 11866-11875.
  286. "Rate determination in phosphorylation of shark rectal Na,K-ATPase by ATP: Temperature sensitivity and effects of ADP"
    Cornelius, F (1999)
    Biophys. J. 77(2), 934-942.
  287. "Adenylosuccinate synthase from Saccharomyces cerevisiae: homologous overexpression, purification and characterization of the recombinant protein"
    Lipps, G; Krauss, G (1999)
    Biochem. J. 341(Pt. Part 3), 537-543.
  288. "Synthesis and biochemical evaluation of bis(6,7-dimethyl-8-D-ribityllumazines) as potential bisubstrate analogue inhibitors of riboflavin synthase"
    Cushman, M; Mavandadi, F; Yang, DL; Kugelbrey, K; Kis, K; Bacher, A (1999)
    J. Org. Chem. 64(13), 4635-4642.
  289. "The propeptides of the vitamin K-dependent proteins possess different affinities for the vitamin K-dependent carboxylase"
    Stanley, TB; Jin, DY; Lin, PJ; Stafford, DW (1999)
    J. Biol. Chem. 274(24), 16940-16944.
  290. "Design, synthesis, and biological evaluation of homologous phosphonic acids and sulfonic acids as inhibitors of lumazine synthase"
    Cushman, M; Mihalic, JT; Kis, K; Bacher, A (1999)
    J. Org. Chem. 64(11), 3838-3845.
  291. "Reactions of prostaglandin endoperoxide synthase with hydroperoxide and reducing substrates under single turnover conditions"
    Koshkin, V; Dunford, HB (1999)
    Biochim. Biophys. Acta-Protein Struct. Molec. Enzym. 1431(1), 47-52.
  292. "RXP 407, a phosphinic peptide, is a potent inhibitor of angiotensin I converting enzyme able to differentiate between its two active sites"
    Dive, V; Cotton, J; Yiotakis, A; Michaud, A; Vassiliou, S; Jiracek, J; Vazeux, G; Chauvet, MT; Cuniasse, P; Corvol, P (1999)
    Proc. Natl. Acad. Sci. U. S. A. 96(8), 4330-4335.
  293. "Coupling of the peroxidase and cyclooxygenase reactions of prostaglandin H synthase"
    Koshkin, V; Dunford, HB (1999)
    Biochim. Biophys. Acta-Protein Struct. Molec. Enzym. 1430(2), 341-348.
  294. "Buffer effects on EcoRV kinetics as measured by fluorescent staining and digital imaging of plasmid cleavage"
    Wenner, JR; Bloomfield, VA (1999)
    Anal. Biochem. 268(2), 201-212.
  295. "Superoxide free radical generation by Amadori compounds: The role of acyclic forms and metal ions"
    Mossine, VV; Linetsky, M; Glinsky, GV; Ortwerth, BJ; Feather, MS (1999)
    Chem. Res. Toxicol. 12(3), 230-236.
  296. "Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: Structure and glycosylase mechanism revisited"
    Xiao, GY; Tordova, M; Jagadeesh, J; Drohat, AC; Stivers, JT; Gilliland, GL (1999)
    Proteins 35(1), 13-24.
  297. "Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase"
    Stivers, JT; Pankiewicz, KW; Watanabe, KA (1999)
    Biochemistry 38(3), 952-963.
  298. "Studies on the catalysis of carbon-cobalt bond homolysis by ribonucleoside triphosphate reductase: Evidence for concerted carbon-cobalt bond homolysis and thiyl radical formation"
    Licht, SS; Booker, S; Stubbe, JA (1999)
    Biochemistry 38(4), 1221-1233.
  299. "General numerical treatment of competitive binding kinetics: Application to thrombin-dehydrothrombin-hirudin"
    Kuzmic, P (1999)
    Anal. Biochem. 267(1), 17-23.
  300. "Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation"
    Mendes, P; Kell, DB (1998)
    Bioinformatics 14(10), 869-883.
  301. "E2P phosphoforms of Na,K-ATPase. II. Interaction of substrate and cation-binding sites in P-i phosphorylation of Na,K-ATPase"
    Cornelius, F; Fedosova, NU; Klodos, I (1998)
    Biochemistry 37(47), 16686-16696.
  302. "Stability of recombinant yeast protoporphyrinogen oxidase: Effects of diphenyl ether-type herbicides and diphenyleneiodonium"
    Arnould, S; Takahashi, M; Camadro, JM (1998)
    Biochemistry 37(37), 12818-12828.
  303. "Spectroscopic characterization of intermediates in the urate oxidase reaction"
    Kahn, K; Tipton, PA (1998)
    Biochemistry 37(33), 11651-11659.
  304. "Antibody catalysis of peptidyl-prolyl cis-trans isomerization in the folding of RNase T1"
    Ma, LF; Hsieh-Wilson, LC; Schultz, PG (1998)
    Proc. Natl. Acad. Sci. U. S. A. 95(13), 7251-7256.
  305. "Kinetic determinations and some kinetic aspects of analytical chemistry"
    Crouch, SR; Cullen, TF; Scheeline, A; Kirkor, ES (1998)
    Anal. Chem. 70(12), 53R-106R.
  306. "Fixed-point methods for computing the equilibrium composition of complex biochemical mixtures"
    Kuzmic, P (1998)
    Biochem. J. 331(Pt. Part 2), 571-575.
  307. "Regulation of extrinsic pathway factor Xa formation by tissue factor pathway inhibitor"
    Baugh, RJ; Broze, GJ; Krishnaswamy, S (1998)
    J. Biol. Chem. 273(8), 4378-4386.
  308. "Design of potent selective zinc-mediated serine protease inhibitors"
    Katz, BA; Clark, JM; Finer-Moore, JS; Jenkins, TE; Johnson, CR; Ross, MJ; Luong, C; Moore, WR; Stroud, RM (1998)
    Nature 391(6667), 608-612.
  309. "Structure-based thermodynamic design of peptide ligands: Application to peptide inhibitors of the aspartic protease endothiapepsin"
    Luque, I; Gomez, J; Semo, N; Freire, E (1998)
    Proteins 30(1), 74-85.

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Top ten journals citing the original DYNAFIT article:

ArticlesJournal
83Biochemistry
42J. Biol. Chem.
14J. Am. Chem. Soc.
14J. Mol. Biol.
12J. Org. Chem.
8Proc. Natl. Acad. Sci. U. S. A.
6Nucleic Acids Res.
6Eur. J. Biochem.
6Biochem. J.
6Chem. Res. Toxicol.
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